Category Research project
  • Mikrobiologie

One health surRveillance Initiative on harmOnization of data collection and Interpretation (EJP ORION)

Project status
Completed
Project start
Jan 2018
Project end
Jun 2021
Acronym
EJP ORION
Department
Biologische Sicherheit

Description and Objective

The aim of the ORION project is to establish and promote inter-institutional cooperation and interdisciplinary knowledge transfer for the integration and interpretation of monitoring data in the sense of the One Health approach. ORION is divided into: Establishment of a One Health Surveillance (OHS) Codex (WP1). The OHS Codex an overarching framework for a harmonised, overall description and categorisation of surveillance data and universally applicable. The following work was carried out: • Inventory and requirements analysis • Development of the OHS Codex • Pilot studies demonstrating practical applicability and added value. The OHS knowledge-hub (WP2) is an inventory of available data sources, methods, algorithms, tools to provide OH surveillance data, data analysis, modelling and decision support. WP2 is subdivided into WP2 EPI, NGS, WP2 Integration. • Work in WP2 EPI is:: o Monitoring systems: Inventory and overview o Web application development o Pilot studies • WP2 NGS: Identification of necessary information for the use of sequencing data. The following work was carried out: o Literature research, expert interviews o Results transfer into a knowledge database which is the basis for the NGS manual o Pilot studies • WP2 Integration: Collection of evidence to support the following statements: o OHS initiatives exist and are implemented o Integration of surveillance data, analysis, interpretation is feasible and improves our understanding of risk and zoonotic disease control o development and implementation of OHS initiatives is complicated, collaboration is needed WP3 OHS Infrastructure Resources (WP3) examines practical, infrastructural resources and works on the following tasks: • Inventory and requirements analysis for OH harmonisation infrastructure (OHH). • Improvement of OHH • Implementation of pilot studies • Evaluation and recommendations

Result

The ORION project finalized the project work as planned in June 2021. As outlined in the original project plan the ORION project developed and optimized One Health resources that were evaluated in a number of national One Health (OH) pilots as well as in a supra-national pilot with EFSAshort forEuropean Food Safety Authority and ECDCshort forEuropean Centre for Disease Prevention and Control.One of the main ORION project outcomes is the so-called “One Health Surveillance (OHS) Codex”, which is a framework supporting the implementation of the One Health paradigm in areas linked to the harmonization of OHS data and solutions. This framework was implemented as a continuously updateable online resource (https://oh-surveillance-codex.readthedocs.io). It is founded on the ORION requirement analysis where ORION partners jointly concluded that surveillance data integration in a One Health context requires a number of specific actions on different problem types by various stakeholders along the full surveillance pathway. This finding led to the design of an extendable OHS Codex structure that covers four main principles. Each principle represents an area, where resources to support cross-sector understanding and information exchange will help stakeholders to adopt the One Health paradigm. This structure enabled ORION partners to develop and integrate a broad spectrum of innovative solutions, resources and findings into a consistent overarching framework, including lessons learned from national pilots. Among others, the OHS Codex encompass the “One Health Report Annotation Checklist” (OH-CRAC), National OHS Report Templates, the One Health EJP Glossary, a OHS Inspiration catalogue, the OH Surveillance Pathway Visualization, the OH Knowledge Base – Surveillance systems, the Sequencing for Surveillance (SfS) Handbook and the Health Surveillance Ontology.In several national OH pilots country specific solutions were established that created direct impact on cross-sector communication, surveillance data exchange and interpretation. For example, in the WP2-NGS pilot the first cross-sector IRIDA (https://www.irida.ca/NGS data analysis platform was established at the Norwegian Research and Education Cloud (https://www.nrec.no/). As a result, there is an increased collaboration and information exchange between the veterinary and public health sectors in Norway. The Danish pilots contributed to improved OH reporting, e.g. the Salmonella and Campylobacter chapter in DANMAP 2019, and the Danish national surveillance system for AMRshort forAntimicrobial resistance and AMU (https://www.danmap.org/). They also established a sequencing based Campylobacter surveillance system that will be extended in the future into a platform for real-time surveillance data and result sharing. The Swedish pilot led to the implementation of new work procedures in the process of generating the annual surveillance reports on zoonotic diseases with an improved collaboration among the national OH sectors. The revised processes helped to identify and address bottlenecks in cross-sectoral interoperability and FAIRness of surveillance results. Innovative data interoperability solutions supporting data interoperability were developed and tested.On international level, the ORION project performed a number of activities to share knowledge with international stakeholders like EFSAshort forEuropean Food Safety Authority and ECDCshort forEuropean Centre for Disease Prevention and Control, for example in a dedicated pilot project. In addition, a number of ORION solutions were integrated into the Surveillance and Information Sharing Operational Tool (SISOT) of WHO/FAO/OIE. Members of the ORION project presented research results at various international conferences, e.g. ASM2019, ASM2020, ASM2021, the 6th World One Health Congress etc., conducted several webinars and organized international workshops with other research projects and institutes, e.g. the NGS workshop 2020, the CPD2021 module, the ASM2021 Satellite Workshop Software Fair. ORION partners published eight scientific publications in peer-reviewed journals and several other publications are still in preparation. The project coordination organized trimonthly web meetings for the whole ORION consortium including stakeholders and interested EJP members, and monthly calls for the WP leaders & deputy leaders. The project contributed to the EJP DMP committee, initiated a number of collaborations and information exchange with other EJP projects (e.g. MATRIX, COHESIVE, RADAR, NOVA, BeONE), initiatives (e.g. RAKIP, SISOT, IRIDA, PAHO-WHO workshops) as well as with national and international research and development projects (SafeConsume, SEQ-TECH, SIGMA, Vinnova, FORMAS, COMBACTE-MAGNET EPI-Net network).
Type of project

Third-party funded project

Research focus

Gesundheit von Mensch, Tier und Umwelt (One Health) / Internationale Zusammenarbeit / Expositionsabschätzung und Bewertung biologischer Risiken

Organisational units and partners

Lead specialist group: Epidemiologie, Statistik und Expositionsmodellierung (33)
Contact persons: Matthias Filter, Dr. Tasja Buschhardt, Dr. Estibaliz Lopez de Abechuco Garrido, Taras Günther, Prof. Dr. Thomas Selhorst
External partner: Statens Serum Institut, DTU National Food Institute, National Institute For Public Health and The Environment, The public health agency of Sweden, Swedish National Veterinary Institute, Sciensano, Friedrich-Loeffler-Institut, Bundesforschungsinstitut für Tiergesundheit, Public Health England, Animal & Plant Health Agency, Norwegian Institute of Public Health, Norwegian Veterinary Institute, Wageningen Bioveterinary Research

Funding body and grant number

Europäische Union
773830